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On the similarity of DNA primary sequences based on 5-D representation

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成果类型:
期刊论文
作者:
Liao, Bo*;Li, Renfa;Zhu, Wen;Xiang, Xuyu
通讯作者:
Liao, Bo
作者机构:
[Liao, Bo] Hunan Univ, Lab Embedded Comp & Syst, Sch Comp & Commun, Changsha 410082, Peoples R China.
Hunan City Univ, Dept Comp Sci, Yiyang 413000, Peoples R China.
通讯机构:
[Liao, Bo] H
Hunan Univ, Lab Embedded Comp & Syst, Sch Comp & Commun, Changsha 410082, Peoples R China.
语种:
英文
关键词:
DNA;similarity;graphical representation;5-D representation;3-D GRAPHICAL REPRESENTATION;NUMERICAL CHARACTERIZATION;SIMILARITY/DISSIMILARITY;CURVES
期刊:
Journal of Mathematical Chemistry
ISSN:
0259-9791
年:
2007
卷:
42
期:
1
页码:
47-57
机构署名:
本校为其他机构
院系归属:
信息与电子工程学院
摘要:
We propose a 5-D representation of DNA sequences based on the classifications of the four basic acid bases A,T,G, and C. The use of the 5-D representation is illustrated by constructing sequence invariants based on the entries in derived sequence matrices restricted to a selected width of a band along the main diagonal. As an application, we make a comparison for the first exon of beta-globin gene sequences belonging to eleven ...

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